Indiana University, Spring 2025
This course studies the fundamental ideas for efficiently analyzing large amounts of data, such as DNA sequence databases and geographic information. These fundamental ideas come in two kinds: algorithms and data structures. Algorithms are instructions for solving problems and data structures are strategies for organizing information on computers. Efficient algorithms require appropriate data structures, and vice versa, so the study of algorithms and data structures is tightly linked. In this course we learn about the algorithms and data structures that form the building blocks for many of Today’s large-scale computer systems. We apply these ideas to solve challenging problems in bioinformatics and geographic information systems. Warning: a possible side-effect of taking this course is doing better on job interview questions.
Lecture
Labs and Teaching Assistants
Thursday 5:30pm-7:25pm, Luddy Hall (IF) Room 1019
Friday 8:45am-10:40am, Luddy Hall (IF) Room 1019
Friday 12:45pm-2:40pm, Myles Brand Hall (I) Room E150
Expect at least one quiz per month during lab time.
Instructors
Teaching Assistants
Office Hours
Office hours with TAs are in Luddy Hall Room 0121. (Starting the week of January 20.)
Time | Monday | Tuesday | Wednesday | Thursday | Friday |
10am | Ashley | Lillie | |||
11am | Dhruv | ||||
12pm | Javaria* | ||||
1pm | Calvin | Javaria | Calvin, Lillie | ||
2pm | Dhruv | Ashley** | |||
3pm | Shulin | Darshal | Shulin | Aniruthan | |
4pm | Matei | Darshal | Matei | Aniruthan | |
5pm |
* Beginning at 12:40 pm ** Beginning at 2:10 pm
Textbook
Data Structures and Algorithm Analysis in Java, 3rd Ed. by Mark A. Weiss
Slack (communicating with instructors and other students)
Schedule
Day | Lecture Topic | Reading Due | Assignments and Due Dates | Link |
Jan. 14 | Introduction | |||
Jan. 16 | Arrays, Rotation, Testing | Ch. 1 | ||
Jan. 16 or 17 | Lab: Array Search and Testing | code, test | ||
Jan. 21 | Algorithm Analysis | Ch. 2 | Lab Array Search due | code, test |
Jan. 23 | Algorithm Analysis, continued | |||
Jan. 23 or 24 | Project: FloodIt! | code | ||
Jan. 28 | Programming in Deduce with Linked Lists | Programming in Deduce | Project FloodIt! due | code |
Jan. 30 | Writing Proofs in Deduce | Proofs in Deduce | ||
Jan. 30 or 31 | Lab: Linked Lists in Deduce | code | ||
Feb. 4 | Writing Proofs and Induction | Lab Linked Lists in Deduce due | ||
Feb. 6 | Logical And, Or, Not, and Sets | |||
Feb. 6 or 7 | Lab: Proof Exercises (Quiz) | |||
Feb. 11 | Discovering and Generalizing Lemmas | Lab Proof Exercises due | submit | |
Feb. 13 | Insertion Sort, Merge Sort, Quick Sort | Ch.7 Sec. 2,6,7 | ||
Feb. 13 or 14 | Lab: Quick Reverse Correct | |||
Feb. 14 | ||||
Feb. 18 | Interfaces and Binary Trees | Ch. 4 Sec. 1-2 | Lab: Quick Reverse Correct due | submit |
Feb. 20 | Binary Search Trees | Ch. 4 Sec. 3 | ||
Feb. 20 or 21 | Lab: Merge Sort | |||
Feb. 25 | Balanced Search Trees (AVL) | Ch. 4 Sec. 4 | Lab MergeSort due | submit |
Feb. 27 | More AVL | |||
Feb. 27 or 28 | Lab: work on Project 2: Segment Intersection | code, test | ||
Feb. 28 | Extra Credit: List Search | submit | ||
March 4 | Recipes for Time Analysis and Testing | |||
March 6 | Hash Tables | Ch. 5 sec. 1,2,3,5,6 | ||
March 6 or 7 | Lab: finish Project 2: Segment Intersection | code, test | ||
March 11 | Review for Midterm Exam | Project Segment Intersection due | ||
March 13 | Midterm Exam (in class) | |||
March 13 or 14 | Lab: Hash Table | code, test | ||
March 17-21 | Spring Break | |||
March 25 | Code Review (Segment Intersection) | Lab Hash Table due | ||
March 27 | Heaps and Priority Queues | Ch. 6 sec. 1-4,9 | ||
March 27 or 28 | Lab: Heap (Huffman Coding) | code, test | ||
April 1 | Graphs and Breadth-first Search | Ch. 9, sec. 1,3 | Lab Heap Due | |
April 3 | Depth-first Search | Ch. 9 sec. 6 | ||
April 3 or 4 | Lab: Connected Components | code, test | ||
April 8 | Shortest Paths | Ch. 9 sec. 3 | Lab Connected Components due | |
April 10 | Union Find | Ch. 8 | ||
April 10 or 11 | Project: Routing Wires | code | ||
April 15 | Minimum Spanning Tree | Ch. 9 sec. 5 | ||
April 17 | Dynamic Programming | Ch. 10, sec. 3 | ||
April 17 or 18 | Project: Routing Wires, cont’d | |||
April 22 | DNA Alignment | Routing Wires due | ||
April 24 | More Dynamic Programming | |||
April 24 or 25 | Lab: DNA Sequence Alignment | code, test | ||
April 29 | Code Review (Routing Wires) | Lab DNA Sequence Alignment due | ||
May 1 | Review for Final Exam | |||
May 1 or 2 | Optional lab for exam review | |||
May 8 | Final Exam (in class) 10:20am-12:20pm |
Resources
Autograder for submitting coding assignments.
Code Editor and Debugger: IntelliJ IDEA (Community Edition)
Note: Autograder uses JUnit5.7.0, so please stick to this version for JUnit.
Deduce Proof Checker
Grade Weighting
Late Policy
This policy applies to labs, projects, textbook exercises, and quizzes. For quizzes, you can do a make-up quiz during office hours. This policy does not apply to the midterm and final exam. When you complete something up to one week late, there is a 10% deduction to its grade.
100% | up to the due date |
90% | up to one week after due date |
0% | after one week past the due date |
Bias-Based Incident Reporting.
Bias-based incident reports can be made by students, faculty and staff. Any act of discrimination or harassment based on race, ethnicity, religious affiliation, gender, gender identity, sexual orientation or disability can be reported through any of the options:
1) email biasincident@indiana.edu or incident@indiana.edu;
2) call the Dean of Students Office at (812) 855-8188 or
3) use the IU mobile App (m.iu.edu). Reports can be made anonymously.
Counseling and Psychological Services.
CAPS has expanded their services. For information about the variety of services offered to students by CAPS visit: https://healthcenter.indiana.edu/counseling/index.html
Disability Services for Students (DSS).
The process to establish accommodations for a student with a disability is a responsibility shared by the student and the DSS Office. Only DSS approved accommodations should be utilized in the classroom. After the student has met with DSS, it is the student’s responsibility to share their accommodations with the faculty member. For information about support services or accommodations available to students with disabilities and for the procedures to be followed by students and instructors, please visit: https://studentaffairs.indiana.edu/disability-services-students/.
Students needing additional financial or other assistance.
The Student Advocates Office (SAO) can help students work through personal and academic problems as well as financial difficulties and concerns. SAO also assists students working through grade appeals and withdrawals from all classes. SAO also has emergency funds for IU students experiencing emergency financial crisis https://studentaffairs.indiana.edu/student-advocates/.
Academic Misconduct.
If you suspect that a student has cheated, plagiarized or otherwise committed academic misconduct, refer to the Code of Student Rights, Responsibilities and Conduct: http://studentcode.iu.edu/.
Sexual Misconduct.
As your instructor, one of my responsibilities is to create a positive learning environment for all students. Title IX and IU’s Sexual Misconduct Policy prohibit sexual misconduct in any form, including sexual harassment, sexual assault, stalking, and dating and domestic violence. If you have experienced sexual misconduct, or know someone who has, the University can help.
If you are seeking help and would like to speak to someone confidentially, you can make an appointment with:
The Sexual Assault Crisis Services (SACS) at (812) 855-8900 (counseling services)
Confidential Victim Advocates (CVA) at (812) 856-2469 (advocacy and advice services)
IU Health Center at (812) 855-4011 (health and medical services)
It is also important that you know that Title IX and University policy require me to share any information brought to my attention about potential sexual misconduct, with the campus Deputy Title IX Coordinator or IU’s Title IX Coordinator. In that event, those individuals will work to ensure that appropriate measures are taken and resources are made available. Protecting student privacy is of utmost concern, and information will only be shared with those that need to know to ensure the University can respond and assist. I encourage you to visit stopsexualviolence.iu.edu to learn more.